diff --git a/.github/workflows/install.yml b/.github/workflows/install.yml
index 922d894c5..20699ee15 100644
--- a/.github/workflows/install.yml
+++ b/.github/workflows/install.yml
@@ -17,8 +17,9 @@ on:
       - main
     paths:
       - 'bin/wally-tool-chain-install.sh'
-      - 'bin/wally-distro-check.sh'
+      - 'bin/wally-environment-check.sh'
       - 'bin/wally-package-install.sh'
+      - 'bin/installation/*'
       - '.github/workflows/install.yml'
   schedule:
     - cron: "0 7 * * 3" # Run at 12:00 AM Pacific Time on Wednesdays
@@ -102,6 +103,7 @@ jobs:
               apt-get install -y git
             elif [ ${{ matrix.imageFamily }} == "redhat" ]; then
               dnf install -y git
+              # Red Hat images come with curl-minimal, which breaks the installation script. This replaces it with regular curl.
               dnf install curl -y --allowerasing || true
             elif [ ${{ matrix.imageFamily }} == "suse" ]; then
               zypper install -y git
@@ -111,7 +113,7 @@ jobs:
       - name: Clone Necessary Submodules
         run: |
               git config --global --add safe.directory '*'
-              git submodule update --init addins/riscv-arch-test addins/verilog-ethernet
+              git submodule update --init addins/riscv-arch-test addins/cvw-arch-verif addins/verilog-ethernet
       # Free up space on the host machine, either from the container or the host
       - name: Free Up Storage
         run: |
@@ -122,6 +124,17 @@ jobs:
                 nsenter -t 1 -m -u -n -i bash -c "$(cat .github/scripts/cli-space-cleanup.sh)"
               fi
               df -h
+      # Set $RISCV so log files can be found and uploaded
+      - name: Set RISCV Environment Variable
+        run: |
+              if [ ! -z ${{ matrix.riscv_path }} ]; then
+                export RISCV=${{ matrix.riscv_path }}
+              elif [ ! -z ${{ matrix.user }} ]; then
+                export RISCV=$HOME/riscv
+              else
+                export RISCV=/opt/riscv
+              fi
+              echo "RISCV=${RISCV}" >> $GITHUB_ENV
       # Run main tool chain installation script, either as a user or system wide
       - name: Install
         run: |
@@ -133,15 +146,10 @@ jobs:
                 sudo ./bin/wally-package-install.sh
                 ./bin/wally-tool-chain-install.sh --clean ${{ matrix.riscv_path }}
               fi
-      # Set environment variables for the rest of the job
-      - name: Set Environment Variables
-        if: always()
-        run: |
-              if [ ! -z ${{ matrix.riscv_path }} ]; then
-                sed -i 's,exit 1,export RISCV=${{ matrix.riscv_path }},g' setup.sh
-              fi
-              source setup.sh
-              echo "RISCV=$RISCV" >> "$GITHUB_ENV"
+      # Update setup.sh if using a custom $RISCV path
+      - name: Update setup.sh
+        if: ${{ matrix.riscv_path != null }}
+        run: sed -i 's,~/riscv,${{ matrix.riscv_path }},g' setup.sh
       # Upload installation logs for debugging
       - name: Upload Installation Logs
         uses: actions/upload-artifact@v4
@@ -160,7 +168,7 @@ jobs:
       - name: make tests
         run: |
               source setup.sh
-              make riscof zsbl --jobs $(nproc --ignore 1)
+              make riscof zsbl deriv coverage --jobs $(nproc --ignore 1)
       # Run standard regression, skipping distros that are known to be broken with Verilator
       - name: Regression
         if: ${{ matrix.regressionFail != true }}
diff --git a/README.md b/README.md
index 1f79dca35..1ffc48e81 100644
--- a/README.md
+++ b/README.md
@@ -118,16 +118,16 @@ If a user-level installation is desired, the script can instead be run by any us
 $ sudo $WALLY/bin/wally-package-install.sh
 ```
 
-In either case, the installation directory can be overridden by passing the desired directory as the last argument to the installation script. For example,
+In either case, the installation directory can be overridden by passing the desired directory as an argument to the installation script. For example,
 
 ```bash
 $ sudo $WALLY/bin/wally-tool-chain-install.sh /home/riscv
 ```
 
-See `wally-tool-chain-install.sh` for a detailed description of each component, or to issue the commands one at a time to install on the command line.
+See `wally-tool-chain-install.sh` and the scripts in the `$WALLY/bin/installation` directory for a detailed description of each component, or to issue the commands one at a time to install on the command line.
 
 > [!NOTE]
-> The complete installation process requires ~55 GB of free space. If the `--clean` flag is passed to the installation script then the final consumed space is only ~26 GB, but upgrading the tools will reinstall everything from scratch.
+> The complete installation process requires ~55 GB of free space. If the `--clean` flag is passed to the installation script then the final consumed space is only ~26 GB. The `--clean` flag removes source files and build directories.
 
 ### Configuration
 `$WALLY/setup.sh` sources `$RISCV/site-setup.sh`. If the toolchain was installed in either of the default locations (`/opt/riscv` or `~/riscv`), `$RISCV` will automatically be set to the correct path when `setup.sh` is run. If a custom installation directory was used, then `$WALLY/setup.sh` must be modified to set the correct path.
diff --git a/addins/cvw-arch-verif b/addins/cvw-arch-verif
index 1afacf04e..7141afd7f 160000
--- a/addins/cvw-arch-verif
+++ b/addins/cvw-arch-verif
@@ -1 +1 @@
-Subproject commit 1afacf04ee975c6bcbc65d36e8648e96f18ea0d4
+Subproject commit 7141afd7feb81a04db8c3110df0ef7d526e4efdb
diff --git a/addins/cvw-riscv-arch-test b/addins/cvw-riscv-arch-test
index 44832a9d3..77907f0c5 160000
--- a/addins/cvw-riscv-arch-test
+++ b/addins/cvw-riscv-arch-test
@@ -1 +1 @@
-Subproject commit 44832a9d3bea991b099c6beb4c962e5b7c1ad3a3
+Subproject commit 77907f0c5eb7b3da44a13597b26fb878d79ba7f5
diff --git a/benchmarks/coremark/expected_coremark_results.csv b/benchmarks/coremark/expected_coremark_results.csv
index fff7b0055..b2b3d23ba 100644
--- a/benchmarks/coremark/expected_coremark_results.csv
+++ b/benchmarks/coremark/expected_coremark_results.csv
@@ -1,13 +1,13 @@
 Architecture,CM / MHz,CPI,MTIME,MINSTRET,Load Stalls,Store Stalls,D$ Accesses,D$ Misses,I$ Accesses,I$ Misses,Branches,Branch Mispredicts,BTB Misses,Jump/JR,RAS Wrong,Returns,BP Class Pred Wrong
-rv32i_zicsr,1.20,1.16,8269385,7124630,261886,22307,716317,73,7827908,1040,2009578,443447,5476,122015,3468,113645,20699
-rv32im_zicsr,3.26,1.12,3061233,2716910,264489,22198,690506,73,2975498,827,543885,45067,5483,30033,69,15237,20898
-rv32imc_zicsr,3.24,1.13,3085767,2716550,264404,23853,690507,75,3011253,285,543761,44223,5615,29675,171,15237,20295
-rv32im_zicsr_zba_zbb_zbs,3.38,1.12,2954414,2624181,266850,22258,689232,75,2878922,494,544408,42375,4295,29685,18,15249,14980
-rv32gc,3.24,1.13,3085783,2716550,264134,23852,690500,74,3010201,286,543485,44182,5563,29668,162,15230,20108
-rv32gc_zba_zbb_zbs,3.32,1.14,3003843,2624181,272635,22141,689226,74,2929468,280,543245,44490,6087,29680,23,15242,22189
-rv64i_zicsr,1.02,1.13,9731538,8559698,273929,22198,720375,85,9242621,588,2340171,459594,4842,128954,178,109383,15941
-rv64im_zicsr,2.86,1.10,3493939,3156218,271101,22149,691714,83,3406099,340,547671,42901,4651,34669,14,15099,15726
-rv64imc_zicsr,2.82,1.12,3545301,3156218,271029,25304,691715,86,3457798,263,547535,43990,4970,34671,5,15099,15889
-rv64im_zicsr_zba_zbb_zbs,3.08,1.11,3241375,2901479,273442,24665,689242,85,3150626,424,547796,41798,4635,34680,43,15111,16143
-rv64gc,2.82,1.12,3545281,3156218,270740,25304,691708,86,3456812,264,547229,43969,4970,34664,5,15092,15889
-rv64gc_zba_zbb_zbs,3.03,1.13,3297540,2901479,273107,26696,689236,83,3200848,250,547359,46238,6197,34675,73,15104,21328
+rv32i_zicsr,1.20,1.16,8269377,7124630,262876,22307,716340,75,7831331,1038,2010591,443551,5476,122038,3467,113668,20699
+rv32im_zicsr,3.26,1.12,3061215,2716910,265481,22198,690529,75,2978839,829,544899,45098,5483,30056,69,15260,20901
+rv32imc_zicsr,3.24,1.13,3085748,2716550,265386,23854,690530,75,3014578,285,544767,44249,5615,29698,171,15260,20295
+rv32im_zicsr_zba_zbb_zbs,3.38,1.12,2954396,2624181,267836,22258,689255,75,2882239,495,545416,42412,4295,29708,18,15272,14980
+rv32gc,3.24,1.13,3085785,2716550,265126,23851,690523,74,3013537,286,544500,44191,5563,29691,162,15253,20108
+rv32gc_zba_zbb_zbs,3.32,1.14,3003858,2624181,273728,22141,689249,75,2932896,280,544260,44486,6087,29703,23,15265,22189
+rv64i_zicsr,1.02,1.13,9731538,8559698,274922,22198,720398,86,9245947,588,2341187,459621,4842,128977,178,109406,15941
+rv64im_zicsr,2.86,1.10,3493929,3156218,272083,22149,691737,85,3409423,340,548686,42924,4651,34692,14,15122,15724
+rv64imc_zicsr,2.82,1.12,3545291,3156218,272037,25303,691738,85,3461141,261,548556,43997,4970,34694,5,15122,15889
+rv64im_zicsr_zba_zbb_zbs,3.08,1.11,3241385,2901479,274441,24666,689265,84,3153960,424,548818,41807,4635,34703,43,15134,16146
+rv64gc,2.82,1.12,3545279,3156218,271734,25303,691731,86,3460160,263,548246,43992,4970,34687,5,15115,15887
+rv64gc_zba_zbb_zbs,3.03,1.13,3297532,2901479,274101,26696,689259,84,3204202,249,548376,46265,6197,34698,73,15127,21328
diff --git a/benchmarks/embench/expected_embench_results/wallySizeOpt_speed.json b/benchmarks/embench/expected_embench_results/wallySizeOpt_speed.json
index f9a787973..75944f70d 100644
--- a/benchmarks/embench/expected_embench_results/wallySizeOpt_speed.json
+++ b/benchmarks/embench/expected_embench_results/wallySizeOpt_speed.json
@@ -1,29 +1,29 @@
 {  "speed results" :
   { "detailed speed results" :
-    { "aha-mont64" : 0.81,
+    { "aha-mont64" : 0.82,
       "crc32" : 1.00,
       "cubic" : 0.42,
-      "edn" : 0.88,
+      "edn" : 0.94,
       "huffbench" : 1.38,
       "matmult-int" : 1.11,
-      "md5sum" : 2.00,
-      "minver" : 0.63,
-      "nbody" : 0.67,
-      "nettle-aes" : 0.82,
-      "nettle-sha256" : 0.96,
+      "md5sum" : 1.98,
+      "minver" : 0.62,
+      "nbody" : 0.66,
+      "nettle-aes" : 0.81,
+      "nettle-sha256" : 0.97,
       "nsichneu" : 1.14,
       "picojpeg" : 0.79,
       "primecount" : 1.30,
-      "qrduino" : 1.22,
+      "qrduino" : 1.23,
       "sglib-combined" : 1.17,
-      "slre" : 1.25,
+      "slre" : 1.26,
       "st" : 0.84,
-      "statemate" : 2.15,
+      "statemate" : 2.16,
       "tarfind" : 2.42,
-      "ud" : 0.88,
+      "ud" : 0.89,
       "wikisort" : 1.71
     },
     "speed geometric mean" : 1.07,
-    "speed geometric standard deviation" : 1.51
+    "speed geometric standard deviation" : 1.50
   }
 }
diff --git a/benchmarks/embench/expected_embench_results/wallySpeedOpt_speed.json b/benchmarks/embench/expected_embench_results/wallySpeedOpt_speed.json
index 837d3ef2a..aabc21b1c 100644
--- a/benchmarks/embench/expected_embench_results/wallySpeedOpt_speed.json
+++ b/benchmarks/embench/expected_embench_results/wallySpeedOpt_speed.json
@@ -1,27 +1,27 @@
 {  "speed results" :
   { "detailed speed results" :
-    { "aha-mont64" : 0.84,
+    { "aha-mont64" : 0.85,
       "crc32" : 1.05,
       "cubic" : 0.42,
       "edn" : 1.06,
       "huffbench" : 1.58,
       "matmult-int" : 1.11,
       "md5sum" : 1.92,
-      "minver" : 0.65,
+      "minver" : 0.66,
       "nbody" : 0.67,
       "nettle-aes" : 0.93,
       "nettle-sha256" : 0.99,
-      "nsichneu" : 0.70,
-      "picojpeg" : 0.99,
+      "nsichneu" : 0.75,
+      "picojpeg" : 1.00,
       "primecount" : 1.41,
-      "qrduino" : 1.32,
+      "qrduino" : 1.35,
       "sglib-combined" : 1.41,
-      "slre" : 1.54,
+      "slre" : 1.52,
       "st" : 0.86,
-      "statemate" : 3.13,
-      "tarfind" : 3.31,
+      "statemate" : 3.16,
+      "tarfind" : 3.21,
       "ud" : 0.94,
-      "wikisort" : 1.74
+      "wikisort" : 1.76
     },
     "speed geometric mean" : 1.15,
     "speed geometric standard deviation" : 1.61
diff --git a/bin/derivgen.pl b/bin/derivgen.pl
index dd736895d..748b3aca3 100755
--- a/bin/derivgen.pl
+++ b/bin/derivgen.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S perl -w
+#!/usr/bin/env perl
 
 ###########################################
 ## derivgen.pl
diff --git a/bin/elf2hex.sh b/bin/elf2hex.sh
deleted file mode 100755
index d36678e9c..000000000
--- a/bin/elf2hex.sh
+++ /dev/null
@@ -1,40 +0,0 @@
-#!/bin/bash
-
-###########################################
-## Written: james.stine@okstate.edu
-## Created: 4 Jan 2022
-## Modified: 
-##
-## Purpose: Script to run elf2hex for memfile for
-##          Imperas and riscv-arch-test benchmarks
-##
-## A component of the CORE-V-WALLY configurable RISC-V project.
-## https://github.com/openhwgroup/cvw
-##
-## Copyright (C) 2021-23 Harvey Mudd College & Oklahoma State University
-##
-## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
-##
-## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file 
-## except in compliance with the License, or, at your option, the Apache License version 2.0. You 
-## may obtain a copy of the License at
-##
-## https:##solderpad.org/licenses/SHL-2.1/
-##
-## Unless required by applicable law or agreed to in writing, any work distributed under the 
-## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, 
-## either express or implied. See the License for the specific language governing permissions 
-## and limitations under the License.
-################################################################################################
-
-for file in work/rv64i_m/*/*.elf ; do
-    memfile=${file%.elf}.elf.memfile
-    echo riscv64-unknown-elf-elf2hex --bit-width 64 --input "$file" 
-    riscv64-unknown-elf-elf2hex --bit-width 64 --input "$file" --output "$memfile"
-done
-
-for file in work/rv32i_m/*/*.elf ; do
-    memfile=${file%.elf}.elf.memfile
-    echo riscv64-unknown-elf-elf2hex --bit-width 32 --input "$file"
-    riscv64-unknown-elf-elf2hex --bit-width 32 --input "$file" --output "$memfile"
-done
diff --git a/bin/exe2memfile.pl b/bin/exe2memfile.pl
deleted file mode 100755
index bab777151..000000000
--- a/bin/exe2memfile.pl
+++ /dev/null
@@ -1,197 +0,0 @@
-#!/usr/bin/env -S perl -w
-
-###########################################
-## exe2memfile.pl
-##
-## Written: David_Harris@hmc.edu 
-## Created: 26 November 2020
-## Modified: 
-##
-## Purpose: Converts an executable file to a series of 32-bit hex instructions
-##          to read into a Verilog simulation with $readmemh
-##
-## A component of the CORE-V-WALLY configurable RISC-V project.
-## https://github.com/openhwgroup/cvw
-##
-## Copyright (C) 2021-23 Harvey Mudd College & Oklahoma State University
-##
-## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
-##
-## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file 
-## except in compliance with the License, or, at your option, the Apache License version 2.0. You 
-## may obtain a copy of the License at
-##
-## https:##solderpad.org/licenses/SHL-2.1/
-##
-## Unless required by applicable law or agreed to in writing, any work distributed under the 
-## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, 
-## either express or implied. See the License for the specific language governing permissions 
-## and limitations under the License.
-################################################################################################
-
-# 
-# 
-
-use File::stat;
-use IO::Handle;
-
-if ($#ARGV == -1) {
-    die("Usage: $0 executable_file");
-}
-
-# array to hold contents of memory file
-my $maxmemfilesize = 1000000;
-my @memfilebytes = (0)*$maxmemfilesize*4;
-my $maxaddress = 0;
-
-STDOUT->autoflush(1);
-my $numfiles = $#ARGV+1;
-if ($numfiles > 1) { 
-    print ("Processing $numfiles memfiles: ");
-}
-my $frac = $#ARGV/10;
-for(my $i=0; $i<=$#ARGV; $i++) {
-    if ($i > 0 && ($i < 10 || $i % $frac == 0)) { print ("$i ") };
-    my $fname = $ARGV[$i];
-#    print "fname = $fname";
-    my $ofile = $fname.".objdump";
-    my $memfile = $fname.".memfile";
-
-    my $needsprocessing = 0;
-    if (!-e $memfile) { $needsprocessing = 1; } # create memfile if it doesn't exist
-    else {
-        my $osb = stat($ofile) || die("Can't stat $ofile");
-        my $msb = stat($memfile) || die("Can't stat $memfile");
-        my $otime = $osb->mtime;
-        my $mtime = $msb->mtime;
-        if ($otime > $mtime) { $needsprocessing = 1; } # is memfile out of date?
-    }
-
-    if ($needsprocessing == 1) {
-        open(FILE, $ofile) || die("Can't read $ofile");
-        my $mode = 0; # parse for code
-        my $address;
-
-    # initialize to all zeros;
-        for (my $i=0; $i < $maxmemfilesize*4; $i++) {
-            $memfilebytes[$i] = "00";
-        }
-
-        while(<FILE>) {
-            if ($mode == 0) { # Parse code
-    #	    print("Examining $_\n");
-            if (/^\s*(\S\S\S\S\S\S\S\S):\s+(\S+)\s+/) {
-                    $address = &fixadr($1);
-                    my $instr = $2;
-                    my $len = length($instr);
-                    for (my $i=0; $i<$len/2; $i++) {
-                        $memfilebytes[$address+$i] = substr($instr, $len-2-2*$i, 2);
-                    }
-    #                print ("address $address $instr\n");
-            }
-                if (/Disassembly of section .data:/) { $mode = 1;}
-            } elsif ($mode == 1) { # Parse data segment
-#                if (/^\s*(\S\S\S\S\S\S\S\S):\s+(.*)/) { # changed to \t 30 Oct 2021 dmh to fix parsing issue in d_fmadd_b17
-                if (/^\s*(\S\S\S\S\S\S\S\S):\s+(.*)/) {
-                    $address = &fixadr($1);
-    #		        print "address $address maxaddress $maxaddress\n";
-                    if ($address > $maxaddress) { $maxaddress = $address; }
-                    #print "test $address $1 $2\n";
-                    my $lineorig = $2;
-                    my $line = $2;
-                    # strip off leading 0x
-                    $line =~ s/^0x//;
-                    # merge chunks with spaces
-                    $line =~ s/(\S)\s(\S)/$1$2/g;
-                    my $linemerge = $line;
-                    # strip off comments
-                    $line =~ /^(\S*)/;
-                    $payload = $1;
-#                    if ($address >= 17520 && $address <= 17552) { # was 12304
-#                        print "Address: $address\n  orig: $lineorig \n  merge: $linemerge \n  line: $line \n  payload: $payload\n";
-#                    }
-                    &emitData($address, $payload);
-                } 
-                if (/Disassembly of section .riscv.attributes:/) { $mode = 2; }
-            }
-        }
-        close(FILE);
-#        print("maxaddress: $maxaddress\n");
-        $maxaddress += 32; # pad some zeros at the end
-#        print("maxaddress: $maxaddress\n");
-
-        # print to memory file
-        if ($fname =~ /rv32/) {
-            open(MEMFILE, ">$memfile") || die("Can't write $memfile");
-            for (my $i=0; $i<= $maxaddress; $i = $i + 4) {
-                for ($j=3; $j>=0; $j--) {
-            if (defined($memfilebytes[$i+$j])) {
-                print MEMFILE "$memfilebytes[$i+$j]";
-            } else {
-                print MEMFILE "00";
-            }
-                }
-                print MEMFILE "\n";
-            }
-            close(MEMFILE);
-        } else {
-            open(MEMFILE, ">$memfile") || die("Can't write $memfile");
-            for (my $i=0; $i<= $maxaddress; $i = $i + 8) {
-                for ($j=7; $j>=0; $j--) {
-                    my $loc = $i+$j;
-#                    if ($loc >= 17520 && $loc <= 17552) {
-#                        print "loc: $loc  val $memfilebytes[$loc]\n";
-#                    }
-                    if (defined($memfilebytes[$loc])) {
-                        print MEMFILE "$memfilebytes[$loc]";
-                    } else {
-                        print MEMFILE "00";
-                    }
-                }
-                print MEMFILE "\n";
-            }
-            close(MEMFILE);
-        }
-    }
-}
-print("\n");
-
-sub emitData {
-    # print the data portion of the ELF into a memory file, including 0s for empty stuff
-    # deal with endianness
-    my $address = shift;
-    my $payload = shift;
-
-#    if ($address > 17520 && $address < 17552) { # was 12304
-#        print("Emitting data.  address = $address payload = $payload\n");
-#    }
-
-    my $len = length($payload);
-    if ($len <= 8) { 
-        # print word or halfword
-        for(my $i=0; $i<$len/2; $i++) {
-            my $adr = $address+$i;
-            my $b = substr($payload, $len-2-2*$i, 2);
-            $memfilebytes[$adr] = $b;
-#            if ($address >= 17520 && $address <= 17552) {
-#                print("  Wrote $b to $adr\n");
-#            }
-#            print(" $adr $b\n");
-        }
-    }  elsif ($len == 12) {
-        # weird case of three halfwords on line
-        &emitData($address, substr($payload, 0, 4));
-        &emitData($address+2, substr($payload, 4, 4));
-        &emitData($address+4, substr($payload, 8, 4));
-    } else {
-        &emitData($address, substr($payload, 0, 8));
-        &emitData($address+4, substr($payload, 8, $len-8));
-    }
-}
-
-sub fixadr {
-    # strip off leading 8 from address and convert to decimal
-    my $adr = shift;
-    if ($adr =~ s/^8/0/) { return hex($adr); }
-    else { die("address $adr lacks leading 8\n"); }
-}
diff --git a/bin/installation/activate-tools.sh b/bin/installation/activate-tools.sh
new file mode 100755
index 000000000..af7e782b2
--- /dev/null
+++ b/bin/installation/activate-tools.sh
@@ -0,0 +1,72 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: Activate gcc and python virtual environment
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Activate python virtual environment
+# Activate riscv-python Virtual Environment
+if [ -e "$RISCV"/riscv-python/bin/activate ]; then
+    source "$RISCV"/riscv-python/bin/activate
+else
+    echo -e "${FAIL_COLOR}Python virtual environment not found. Run wally-toolchain-install.sh or python-setup.sh to automatically create it.${ENDC}"
+    return 1
+fi
+
+# Enable newer version of gcc for older distros (required for QEMU/Verilator)
+if [ "$FAMILY" == rhel ]; then
+    if [ -e /opt/rh/gcc-toolset-13/enable ]; then
+        source /opt/rh/gcc-toolset-13/enable
+    else
+        echo -e "${FAIL_COLOR}GCC toolset 13 not found. Please install it with wally-package-install.sh.${ENDC}"
+        return 1
+    fi
+elif [ "$FAMILY" == suse ]; then
+    if [ ! -e "$RISCV"/gcc-13/bin/gcc ]; then
+        mkdir -p "$RISCV"/gcc-13/bin
+        for f in gcc cpp g++ gcc-ar gcc-nm gcc-ranlib gcov gcov-dump gcov-tool lto-dump; do
+            ln -vsf /usr/bin/$f-13 "$RISCV"/gcc-13/bin/$f
+        done
+    fi
+    export PATH="$RISCV"/gcc-13/bin:$PATH
+elif (( UBUNTU_VERSION == 20 )); then
+    if [ ! -e "$RISCV"/gcc-10/bin/gcc ]; then
+        mkdir -p "$RISCV"/gcc-10/bin
+        for f in gcc cpp g++ gcc-ar gcc-nm gcc-ranlib gcov gcov-dump gcov-tool lto-dump; do
+            ln -vsf /usr/bin/$f-10 "$RISCV"/gcc-10/bin/$f
+        done
+    fi
+    export PATH="$RISCV"/gcc-10/bin:$PATH
+fi
diff --git a/bin/installation/buildroot-install.sh b/bin/installation/buildroot-install.sh
new file mode 100755
index 000000000..21c6f9f74
--- /dev/null
+++ b/bin/installation/buildroot-install.sh
@@ -0,0 +1,56 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: Buildroot and Linux testvector installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Buildroot and Linux testvectors
+# Buildroot is used to boot a minimal version of Linux on Wally.
+# Testvectors are generated using QEMU.
+section_header "Installing Buildroot and Creating Linux testvectors"
+STATUS="buildroot"
+export LD_LIBRARY_PATH=$RISCV/lib:$RISCV/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}:$RISCV/riscv64-unknown-elf/lib:$RISCV/lib/x86_64-linux-gnu
+cd "$WALLY"/linux
+if [ ! -e "$RISCV"/buildroot ]; then
+    FORCE_UNSAFE_CONFIGURE=1 make 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ] # FORCE_UNSAFE_CONFIGURE is needed to allow buildroot to compile when run as root
+    echo -e "${SUCCESS_COLOR}Buildroot successfully installed and Linux testvectors created!${ENDC}"
+elif [ ! -e "$RISCV"/linux-testvectors ]; then
+    echo -e "${OK_COLOR}Buildroot already exists, but Linux testvectors are missing. Generating them now.${ENDC}"
+    make dumptvs 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    echo -e "${SUCCESS_COLOR}Linux testvectors successfully generated!${ENDC}"
+else
+    echo -e "${OK_COLOR}Buildroot and Linux testvectors already exist.${ENDC}"
+    echo -e "${WARNING_COLOR}Buildroot is not updated automatically. If you want to install a newer version, delete the existing $RISCV/buildroot directory and rerun this script.${ENDC}"
+fi
diff --git a/bin/installation/elf2hex-install.sh b/bin/installation/elf2hex-install.sh
new file mode 100755
index 000000000..af6409b69
--- /dev/null
+++ b/bin/installation/elf2hex-install.sh
@@ -0,0 +1,73 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: elf2hex installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+ELF2HEX_VERSION=f28a3103c06131ed3895052b1341daf4ca0b1c9c # Last commit as of May 30, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# elf2hex (https://github.com/sifive/elf2hex)
+# The elf2hex utility to converts executable files into hexadecimal files for Verilog simulation.
+# Note: The exe2hex utility that comes with Spike doesn’t work for our purposes because it doesn’t
+# handle programs that start at 0x80000000. The SiFive version above is touchy to install.
+# For example, if Python version 2.x is in your path, it won’t install correctly.
+# Also, be sure riscv64-unknown-elf-objcopy shows up in your path in $RISCV/bin
+# at the time of compilation, or elf2hex won’t work properly.
+section_header "Installing/Updating elf2hex"
+STATUS="elf2hex"
+cd "$RISCV"
+if check_tool_version $ELF2HEX_VERSION; then
+    # Verify riscv64-unknown-elf-objcopy is available
+    if ! command -v riscv64-unknown-elf-objcopy >/dev/null 2>&1; then
+        echo -e "${FAIL_COLOR}ERROR: riscv64-unknown-elf-objcopy not found in \$PATH.${ENDC}"
+        echo -e "${FAIL_COLOR}Run wally-tool-chain-install.sh or riscv-gnu-toolchain-install.sh before installing elf2hex.${ENDC}"
+        exit 1
+    fi
+
+    git_checkout "elf2hex" "https://github.com/sifive/elf2hex.git" "$ELF2HEX_VERSION"
+    cd "$RISCV"/elf2hex
+    autoreconf -i
+    ./configure --target=riscv64-unknown-elf --prefix="$RISCV"
+    make 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf elf2hex
+    fi
+    echo "$ELF2HEX_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}elf2hex successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}elf2hex already up to date.${ENDC}"
+fi
diff --git a/bin/installation/glib-installation.sh b/bin/installation/glib-installation.sh
new file mode 100755
index 000000000..93e4ac787
--- /dev/null
+++ b/bin/installation/glib-installation.sh
@@ -0,0 +1,58 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: glib installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Newer version of glib required for QEMU.
+# Anything newer than this won't build on red hat 8
+STATUS="glib"
+if [ ! -e "$RISCV"/include/glib-2.0 ]; then
+    section_header "Installing glib"
+    pip --require-virtualenv install -U meson # Meson is needed to build glib
+    cd "$RISCV"
+    wget -nv --retry-connrefused $retry_on_host_error https://download.gnome.org/sources/glib/2.70/glib-2.70.5.tar.xz
+    tar -xJf glib-2.70.5.tar.xz
+    rm -f glib-2.70.5.tar.xz
+    cd glib-2.70.5
+    meson setup _build --prefix="$RISCV"
+    meson compile -C _build -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    meson install -C _build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    cd "$RISCV"
+    rm -rf glib-2.70.5
+    echo -e "${SUCCESS_COLOR}glib successfully installed!${ENDC}"
+else
+    echo -e "${OK_COLOR}glib already installed.${ENDC}"
+fi
\ No newline at end of file
diff --git a/bin/installation/python-setup.sh b/bin/installation/python-setup.sh
new file mode 100755
index 000000000..dafe3a43a
--- /dev/null
+++ b/bin/installation/python-setup.sh
@@ -0,0 +1,63 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: WALLY python virtual environment setup script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+# NOTE: These three tools need to be kept in sync. Update all versions simultaneously.
+export RISCOF_VERSION=be84132874963e001c14d846a140a3edd9c9d48f # Last commit as May 31, 2025
+export RISCV_CONFIG_VERSION=54171f205be802f9f8e0b1cf4156a6cc826fb467 # Last commit as of May 31, 2025
+export RISCV_ISAC_VERSION=450de2eabfe4fcdfdf54135b5ab2dbb1d94805f8 # Last commit as of May 31, 2025 (commit hash of riscv-arch-test repo)
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Create python virtual environment so the python command targets desired version of python
+# and installed packages are isolated from the rest of the system.
+section_header "Setting up Python Environment"
+STATUS="python_virtual_environment"
+cd "$RISCV"
+if [ ! -e "$RISCV"/riscv-python/bin/activate ]; then
+    "$PYTHON_VERSION" -m venv riscv-python --prompt cvw
+    echo -e "${OK_COLOR}Python virtual environment created!\nInstalling pip packages.${ENDC}"
+else
+    echo -e "${OK_COLOR}Python virtual environment already exists.\nUpdating pip packages.${ENDC}"
+fi
+
+source "$RISCV"/riscv-python/bin/activate # activate python virtual environment
+
+# Install python packages, including RISCOF (https://github.com/riscv-software-src/riscof.git)
+# RISCOF is a RISC-V compliance test framework that is used to run the RISC-V Arch Tests.
+STATUS="python packages"
+pip --require-virtualenv install --upgrade pip && pip --require-virtualenv install --upgrade -r "$WALLY"/bin/requirements.txt
+
+echo -e "${SUCCESS_COLOR}Python environment successfully configured!${ENDC}"
diff --git a/bin/installation/qemu-install.sh b/bin/installation/qemu-install.sh
new file mode 100755
index 000000000..5e2248548
--- /dev/null
+++ b/bin/installation/qemu-install.sh
@@ -0,0 +1,60 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: QEMU installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+QEMU_VERSION=v10.0.2 # Last release as of May 30, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# QEMU (https://www.qemu.org/docs/master/system/target-riscv.html)
+# QEMU is an open source machine emulator and virtualizer capable of emulating RISC-V
+section_header "Installing/Updating QEMU"
+STATUS="qemu"
+cd "$RISCV"
+if check_tool_version $QEMU_VERSION; then
+    git_checkout "qemu" "https://github.com/qemu/qemu" "$QEMU_VERSION"
+    cd "$RISCV"/qemu
+    ./configure --target-list=riscv64-softmmu --prefix="$RISCV"
+    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf qemu
+    fi
+    echo "$QEMU_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}QEMU successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}QEMU already up to date.${ENDC}"
+fi
diff --git a/bin/installation/riscv-gnu-toolchain-install.sh b/bin/installation/riscv-gnu-toolchain-install.sh
new file mode 100755
index 000000000..fd3d7963c
--- /dev/null
+++ b/bin/installation/riscv-gnu-toolchain-install.sh
@@ -0,0 +1,63 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: QEMU installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+RISCV_GNU_TOOLCHAIN_VERSION=23863c2ca74e6c050f0c97e7af61f5f1776aadd1 # Last commit with GCC 14.2.0
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# RISC-V GNU Toolchain (https://github.com/riscv-collab/riscv-gnu-toolchain)
+# The RISC-V GNU Toolchain includes the GNU Compiler Collection (gcc), GNU Binutils, Newlib,
+# and the GNU Debugger Project (gdb). It is a collection of tools used to compile RISC-V programs.
+# To install GCC from source can take hours to compile.
+# This configuration enables multilib to target many flavors of RISC-V.
+# This book is tested with GCC 13.2.0 and 14.2.0.
+section_header "Installing/Updating RISC-V GNU Toolchain"
+STATUS="riscv-gnu-toolchain"
+cd "$RISCV"
+if check_tool_version $RISCV_GNU_TOOLCHAIN_VERSION; then
+    git_checkout "riscv-gnu-toolchain" "https://github.com/riscv/riscv-gnu-toolchain" "$RISCV_GNU_TOOLCHAIN_VERSION"
+    cd "$RISCV"/riscv-gnu-toolchain
+    ./configure --prefix="${RISCV}" --with-multilib-generator="rv32e-ilp32e--;rv32i-ilp32--;rv32im-ilp32--;rv32iac-ilp32--;rv32imac-ilp32--;rv32imafc-ilp32f--;rv32imafdc-ilp32d--;rv64i-lp64--;rv64ic-lp64--;rv64iac-lp64--;rv64imac-lp64--;rv64imafdc-lp64d--;rv64im-lp64--;"
+    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf riscv-gnu-toolchain
+    fi
+    echo "$RISCV_GNU_TOOLCHAIN_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}RISC-V GNU Toolchain successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}RISC-V GNU Toolchain already up to date.${ENDC}"
+fi
diff --git a/bin/installation/sail-install.sh b/bin/installation/sail-install.sh
new file mode 100755
index 000000000..8b8a0d79c
--- /dev/null
+++ b/bin/installation/sail-install.sh
@@ -0,0 +1,102 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: QEMU installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+SAIL_COMPILER_VERSION=0.19 # Last release as of May 30, 2025
+CMAKE_VERSION=3.31.5 # Only used for distros with a system CMake that is too old (< 3.20)
+RISCV_SAIL_MODEL_VERSION=a214c522a2f98dc3b1f381169d0b1a27bbe0acd8 # Last commit as of May 29, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Sail Compiler (https://github.com/rems-project/sail)
+# Sail is a formal specification language designed for describing the semantics of an ISA.
+# It is used to generate the RISC-V Sail Model, which is the golden reference model for RISC-V.
+# The Sail Compiler is written in OCaml, which is an object-oriented extension of ML, which in turn
+# is a functional programming language suited to formal verification.
+section_header "Installing/Updating Sail Compiler"
+STATUS="sail_compiler"
+if check_tool_version $SAIL_COMPILER_VERSION; then
+    cd "$RISCV"
+    wget -nv --retry-connrefused $retry_on_host_error --output-document=sail.tar.gz "https://github.com/rems-project/sail/releases/download/$SAIL_COMPILER_VERSION-linux-binary/sail.tar.gz"
+    tar xz --directory="$RISCV" --strip-components=1 -f sail.tar.gz
+    rm -f sail.tar.gz
+    echo "$SAIL_COMPILER_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}Sail Compiler successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}Sail Compiler already installed.${ENDC}"
+fi
+
+# Newer version of CMake needed to build sail-riscv model (at least 3.20)
+if (( UBUNTU_VERSION == 20  || DEBIAN_VERSION == 11 )); then
+    STATUS="cmake"
+    if [ ! -e "$RISCV"/bin/cmake ] || [ "$("$RISCV"/bin/cmake --version | head -n1 | sed 's/cmake version //')" != "$CMAKE_VERSION" ]; then
+        section_header "Installing CMake"
+        cd "$RISCV"
+        wget -nv --retry-connrefused $retry_on_host_error --output-document=cmake.tar.gz "https://github.com/Kitware/CMake/releases/download/v$CMAKE_VERSION/cmake-$CMAKE_VERSION-linux-x86_64.tar.gz"
+        tar xz --directory="$RISCV" --strip-components=1 -f cmake.tar.gz
+        rm -f cmake.tar.gz
+        echo -e "${SUCCESS_COLOR}CMake successfully installed/updated!${ENDC}"
+    else
+        echo -e "${SUCCESS_COLOR}CMake already installed.${ENDC}"
+    fi
+fi
+
+# Newer version of gmp needed for sail-riscv model on RHEL 8
+# sail-riscv will download and build gmp if told to do so, so no need to install it manually.
+if (( RHEL_VERSION == 8 )); then
+    DOWNLOAD_GMP=TRUE
+else
+    DOWNLOAD_GMP=FALSE
+fi
+
+# RISC-V Sail Model (https://github.com/riscv/sail-riscv)
+# The RISC-V Sail Model is the golden reference model for RISC-V. It is written in Sail (described above)
+section_header "Installing/Updating RISC-V Sail Model"
+STATUS="riscv-sail-model"
+if check_tool_version $RISCV_SAIL_MODEL_VERSION; then
+    git_checkout "sail-riscv" "https://github.com/riscv/sail-riscv.git" "$RISCV_SAIL_MODEL_VERSION"
+    cd "$RISCV"/sail-riscv
+    cmake -S . -B build -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_INSTALL_PREFIX="$RISCV" -DDOWNLOAD_GMP="$DOWNLOAD_GMP" -GNinja 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    cmake --build build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    cmake --install build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf sail-riscv
+    fi
+    echo "$RISCV_SAIL_MODEL_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}RISC-V Sail Model successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}RISC-V Sail Model already up to date.${ENDC}"
+fi
diff --git a/bin/installation/skywater-lib-install.sh b/bin/installation/skywater-lib-install.sh
new file mode 100755
index 000000000..b738ce5ba
--- /dev/null
+++ b/bin/installation/skywater-lib-install.sh
@@ -0,0 +1,53 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: QEMU installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+SKYWATER_LIB_VERSION=ac90ef0c622a9377a16b5218d9da3ac4169eeaaf # Last commit as of May 30, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# OSU Skywater 130 cell library (https://foss-eda-tools.googlesource.com/skywater-pdk/libs/sky130_osu_sc_t12)
+# The OSU Skywater 130 cell library is a standard cell library that is used to synthesize Wally.
+section_header "Installing/Updating OSU Skywater 130 cell library"
+STATUS="osu_skywater_130_cell_library"
+mkdir -p "$RISCV"/cad/lib
+cd "$RISCV"/cad/lib
+if check_tool_version $SKYWATER_LIB_VERSION; then
+    git_checkout "sky130_osu_sc_t12" "https://foss-eda-tools.googlesource.com/skywater-pdk/libs/sky130_osu_sc_t12" "$SKYWATER_LIB_VERSION"
+    echo "$SKYWATER_LIB_VERSION" > "$RISCV"/versions/$STATUS.version
+    echo -e "${SUCCESS_COLOR}OSU Skywater library successfully installed!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}OSU Skywater library already up to date.${ENDC}"
+fi
diff --git a/bin/installation/spike-install.sh b/bin/installation/spike-install.sh
new file mode 100755
index 000000000..0fc3a9ba9
--- /dev/null
+++ b/bin/installation/spike-install.sh
@@ -0,0 +1,62 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: Spike installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+SPIKE_VERSION=4c870d063dbbaeb4dc7007fe5c2a1bf8b00a767e # Last commit as of May 30, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Spike (https://github.com/riscv-software-src/riscv-isa-sim)
+# Spike is a reference model for RISC-V. It is a functional simulator that can be used to run RISC-V programs.
+section_header "Installing/Updating SPIKE"
+STATUS="spike"
+cd "$RISCV"
+if check_tool_version $SPIKE_VERSION; then
+    git_checkout "riscv-isa-sim" "https://github.com/riscv-software-src/riscv-isa-sim" "$SPIKE_VERSION"
+    cd "$RISCV"/riscv-isa-sim
+    mkdir -p build
+    cd build
+    ../configure --prefix="$RISCV"
+    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf riscv-isa-sim
+    fi
+    echo "$SPIKE_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}Spike successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}Spike already up to date.${ENDC}"
+fi
diff --git a/bin/installation/verilator-install.sh b/bin/installation/verilator-install.sh
new file mode 100755
index 000000000..728ee20b9
--- /dev/null
+++ b/bin/installation/verilator-install.sh
@@ -0,0 +1,79 @@
+#!/bin/bash
+###########################################
+## Tool chain install script.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: Verilator installation script
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+VERILATOR_VERSION=v5.036 # Last release as of May 30, 2025
+
+set -e # break on error
+# If run standalone, check environment. Otherwise, use info from main install script
+if [ -z "$FAMILY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname $(dirname "$dir"))"
+    export WALLY
+    source "${dir}"/../wally-environment-check.sh
+fi
+
+# Mold needed for Verilator, not available in all package managers.
+if (( UBUNTU_VERSION == 20  || DEBIAN_VERSION == 11 )) || [ "$FAMILY" == suse ]; then
+    STATUS="mold"
+    if [ ! -e "$RISCV"/bin/mold ]; then
+        section_header "Installing mold"
+        cd "$RISCV"
+        wget -nv --retry-connrefused $retry_on_host_error --output-document=mold.tar.gz https://github.com/rui314/mold/releases/download/v2.34.1/mold-2.34.1-x86_64-linux.tar.gz
+        tar xz --directory="$RISCV" --strip-components=1 -f mold.tar.gz
+        rm -f mold.tar.gz
+        echo -e "${SUCCESS_COLOR}Mold successfully installed/updated!${ENDC}"
+    else
+        echo -e "${SUCCESS_COLOR}Mold already installed.${ENDC}"
+    fi
+fi
+
+# Verilator (https://github.com/verilator/verilator)
+# Verilator is a fast open-source Verilog simulator that compiles synthesizable Verilog code into C++ code.
+# It is used for linting and simulation of Wally.
+# Verilator needs to be built from source to get the latest version (Wally needs 5.021 or later).
+section_header "Installing/Updating Verilator"
+STATUS="verilator"
+cd "$RISCV"
+if check_tool_version $VERILATOR_VERSION; then
+    git_checkout "verilator" "https://github.com/verilator/verilator" "$VERILATOR_VERSION"
+    unset VERILATOR_ROOT
+    cd "$RISCV"/verilator
+    autoconf
+    ./configure --prefix="$RISCV"
+    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
+    if [ "$clean" = true ]; then
+        cd "$RISCV"
+        rm -rf verilator
+    fi
+    echo "$VERILATOR_VERSION" > "$RISCV"/versions/$STATUS.version # Record installed version
+    echo -e "${SUCCESS_COLOR}Verilator successfully installed/updated!${ENDC}"
+else
+    echo -e "${SUCCESS_COLOR}Verilator already up to date.${ENDC}"
+fi
diff --git a/bin/installation/wally-installation-helper-functions.sh b/bin/installation/wally-installation-helper-functions.sh
new file mode 100755
index 000000000..6b4d8c89b
--- /dev/null
+++ b/bin/installation/wally-installation-helper-functions.sh
@@ -0,0 +1,111 @@
+#!/bin/bash
+###########################################
+## Installation helper functions.
+##
+## Written: Jordan Carlin, jcarlin@hmc.edu
+## Created: May 30 2025
+## Modified: 
+##
+## Purpose: Common functions for toolchain installation scripts
+##
+## A component of the CORE-V-WALLY configurable RISC-V project.
+## https://github.com/openhwgroup/cvw
+##
+## Copyright (C) 2021-24 Harvey Mudd College & Oklahoma State University
+##
+## SPDX-License-Identifier: Apache-2.0 WITH SHL-2.1
+##
+## Licensed under the Solderpad Hardware License v 2.1 (the “License”); you may not use this file
+## except in compliance with the License, or, at your option, the Apache License version 2.0. You
+## may obtain a copy of the License at
+##
+## https:##solderpad.org/licenses/SHL-2.1/
+##
+## Unless required by applicable law or agreed to in writing, any work distributed under the
+## License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
+## either express or implied. See the License for the specific language governing permissions
+## and limitations under the License.
+################################################################################################
+
+set -e # break on error
+
+## Helper functions
+# Error handler
+error() {
+    echo -e "${FAIL_COLOR}Error: $STATUS installation failed"
+    echo -e "Error on line ${BASH_LINENO[0]} with command $BASH_COMMAND${ENDC}"
+    if [ -e "$RISCV/logs/$STATUS.log" ]; then
+        echo -e "Please check the log in $RISCV/logs/$STATUS.log for more information."
+    fi
+    exit 1
+}
+
+# Check if the specificed version of a tool is installed
+# $1: required version
+# Tool inferred from $STATUS variable
+check_tool_version() {
+    local required_version="$1"
+    local version_file="$RISCV/versions/$STATUS.version"
+    if [ -f "$version_file" ] && [ "$(cat "$version_file")" = "$required_version" ]
+    then
+        return 1  # Tool is up-to-date
+    else
+        return 0  # Tool needs installation or update
+    fi
+}
+
+# Checkout specified version of a git repository
+# $1: repo name
+# $2: repo url to clone from
+# $3: version to checkout (commit hash or tag)
+git_checkout() {
+    local repo=$1
+    local url=$2
+    local version=$3
+
+    # Clone repo if it doesn't exist
+    if [[ ! -e $repo ]]; then
+        for ((i=1; i<=5; i++)); do
+            git clone "$url" "$repo" && break
+            echo -e "${WARNING_COLOR}Failed to clone $repo. Retrying.${ENDC}"
+            rm -rf "$repo"
+            sleep $i
+        done
+        if [[ ! -e $repo ]]; then
+            echo -e "${ERROR_COLOR}Failed to clone $repo after 5 attempts. Exiting.${ENDC}"
+            exit 1
+        fi
+    fi
+
+    # Update the repository
+    cd "$repo"
+    git fetch --all
+
+    # Checkout the specified version
+    git reset --hard "$version"
+    git clean -f && git submodule update
+}
+
+# Log output to a file and only print lines with keywords
+logger() {
+    local log_file="$RISCV/logs/$STATUS.log"
+    local keyword_pattern="(\bwarning|\berror|\bfail|\bsuccess|\bstamp|\bdoesn't work)"
+    local exclude_pattern="(_warning|warning_|_error|error_|-warning|warning-|-error|error-|Werror|error\.o|warning flags)"
+
+    cat < /dev/stdin | tee -a "$log_file" | \
+    (grep -iE --color=never "$keyword_pattern" || true) | \
+    (grep -viE --color=never "$exclude_pattern" || true)
+}
+
+# Print section header
+section_header() {
+    if tput cols > /dev/null 2>&1; then
+        printf "${SECTION_COLOR}%$(tput cols)s\n" | tr ' ' '#'
+        printf "%$(tput cols)s\n" | tr ' ' '#'
+        printf "%s\n" "$1"
+        printf "%$(tput cols)s\n" | tr ' ' '#'
+        printf "%$(tput cols)s${ENDC}\n" | tr ' ' '#'
+    else
+        printf "${SECTION_COLOR}%s\n${ENDC}" "$1"
+    fi
+}
diff --git a/bin/libppa.pl b/bin/libppa.pl
index eddfc3686..06b04b318 100755
--- a/bin/libppa.pl
+++ b/bin/libppa.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S perl -w
+#!/usr/bin/env perl
 
 ###########################################
 ## libppa.pl
diff --git a/bin/requirements.txt b/bin/requirements.txt
index f0bb082fd..f5440ec93 100644
--- a/bin/requirements.txt
+++ b/bin/requirements.txt
@@ -4,9 +4,9 @@ Markdown>=3.6
 matplotlib>=3.9.0
 pre-commit>=4.0.0
 PyYAML>=5.2
-riscof @ git+https://github.com/riscv/riscof.git
-riscv-config @ git+https://github.com/riscv-software-src/riscv-config
-riscv-isac @ git+https://github.com/riscv-non-isa/riscv-arch-test/#subdirectory=riscv-isac
+riscof @ git+https://github.com/riscv/riscof.git@${RISCOF_VERSION} # version set in python-setup.sh
+riscv-config @ git+https://github.com/riscv-software-src/riscv-config.git@${RISCV_CONFIG_VERSION} # version set in python-setup.sh
+riscv-isac @ git+https://github.com/riscv-non-isa/riscv-arch-test.git@${RISCV_ISAC_VERSION}#subdirectory=riscv-isac # version set in python-setup.sh
 scikit-learn>=1.5.0
 scipy>=1.13.0
 setuptools
diff --git a/bin/testlist.pl b/bin/testlist.pl
index 50b77eb78..0649f6261 100755
--- a/bin/testlist.pl
+++ b/bin/testlist.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S perl -w
+#!/usr/bin/env perl
 
 ###########################################
 ## testlist.pl
diff --git a/bin/vclean.pl b/bin/vclean.pl
index 94a14c54c..e1b36abbd 100755
--- a/bin/vclean.pl
+++ b/bin/vclean.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S perl -w
+#!/usr/bin/env perl
 
 ###########################################
 ## vclean.pl
diff --git a/bin/wally-distro-check.sh b/bin/wally-environment-check.sh
similarity index 60%
rename from bin/wally-distro-check.sh
rename to bin/wally-environment-check.sh
index 0ea7fdaf3..a36f788aa 100755
--- a/bin/wally-distro-check.sh
+++ b/bin/wally-environment-check.sh
@@ -1,10 +1,10 @@
 #!/bin/bash
 ###########################################
-## Get Linux distro information
+## Get Linux distro information and check environment
 ##
 ## Written: Jordan Carlin, jcarlin@hmc.edu
 ## Created: 30 June 2024
-## Modified:
+## Modified: May 30 2025
 ##
 ## Purpose: Check for compatible Linux distribution and set variables accordingly
 ##
@@ -29,31 +29,31 @@
 
 set -e # break on error
 
-# Colors
+### Colors ###
 BOLD='\033[1m'
 UNDERLINE='\033[4m'
 SECTION_COLOR='\033[95m'$BOLD
 OK_COLOR='\033[94m'
+SUCCESS_COLOR='\033[92m'
 WARNING_COLOR='\033[93m'
 FAIL_COLOR='\033[91m'
 ENDC='\033[0m' # Reset to default color
 
-# Print section header
-section_header() {
-    if tput cols > /dev/null 2>&1; then
-        printf "${SECTION_COLOR}%$(tput cols)s\n" | tr ' ' '#'
-        printf "%$(tput cols)s\n" | tr ' ' '#'
-        printf "%s\n" "$1"
-        printf "%$(tput cols)s\n" | tr ' ' '#'
-        printf "%$(tput cols)s${ENDC}\n" | tr ' ' '#'
-    else
-        printf "${SECTION_COLOR}%s\n${ENDC}" "$1"
-    fi
-}
+if [ -z "$WALLY" ]; then
+    dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+    WALLY="$(dirname "$dir")"
+    export WALLY
+fi
+
+### Common functions and error handling ###
+source "$WALLY"/bin/installation/wally-installation-helper-functions.sh
+trap error ERR # run error handler on error
+STATUS="setup" # keep track of what part of the installation is running for error messages
+
 
 section_header "Checking System Requirements and Configuring Installation"
 
-# Get distribution information
+### Get distribution information ###
 if [ -f /etc/os-release ]; then
     source /etc/os-release
 else
@@ -131,6 +131,85 @@ else
     exit 1
 fi
 
-printf "${OK_COLOR}${UNDERLINE}%s\n${ENDC}" "Detected information"
+# wget retry on host error flag not available with older wget on RHEL 8
+if (( RHEL_VERSION != 8 )); then
+    retry_on_host_error="--retry-on-host-error"
+fi
+
+
+### Configure installation ###
+# Check flags
+clean=false
+no_buildroot=false
+packages_only=false
+while [[ "$#" -gt 0 ]]; do
+    case $1 in
+        -c|--clean) clean=true ;;
+        --no-buildroot) no_buildroot=true ;;
+        --packages-only) packages_only=true;;
+        -h|--help)
+            echo -e "Usage: $0 [\$RISCV] [options]"
+            echo -e "${BOLD}Options:${ENDC}"
+            echo -e "  -c, --clean          Remove build directories after installation"
+            echo -e "  --no-buildroot       Skip installing Buildroot and Linux testvectors"
+            echo -e "  \$RISCV              Directory to install RISC-V tools (default: /opt/riscv as root, $HOME/riscv otherwise)"
+            exit 0 ;;
+        *) RISCV="$1" ;;
+    esac
+    shift
+done
+
+# Check if root
+ROOT=$( [ "${EUID:=$(id -u)}" == 0 ] && echo true || echo false);
+
+### Print system information ###
+echo -e "${OK_COLOR}${UNDERLINE}Detected information${ENDC}"
 echo "Distribution: $PRETTY_NAME"
 echo "Version: $VERSION"
+echo "Running as root: $ROOT"
+
+if [ $packages_only != true ]; then 
+    # Set installation directory based on execution privileges
+    # If the script is run as root, the default installation path is /opt/riscv
+    # If the script is run as a user, the default installation path is ~/riscv
+    # The installation path can be overridden with a positional argument passed to the script.
+    if [ "$ROOT" == true ]; then
+        export RISCV="${RISCV:-/opt/riscv}"
+    else
+        export RISCV="${RISCV:-$HOME/riscv}"
+    fi
+
+    # Set environment variables
+    export PATH=$RISCV/bin:$PATH:/usr/bin
+    export PKG_CONFIG_PATH=$RISCV/lib64/pkgconfig:$RISCV/lib/pkgconfig:$RISCV/share/pkgconfig:$RISCV/lib/x86_64-linux-gnu/pkgconfig${PKG_CONFIG_PATH:+:${PKG_CONFIG_PATH}}
+
+    # Check for incompatible PATH environment variable before proceeding with installation
+    if [[ ":$PATH:" == *::* || ":$PATH:" == *:.:* ]]; then
+        echo -e "${FAIL_COLOR}Error: You seem to have the current working directory in your \$PATH environment variable."
+        echo -e "This won't work. Please update your \$PATH and try again.${ENDC}"
+        exit 1
+    fi
+
+    # Increasing NUM_THREADS will speed up parallel compilation of the tools
+    NUM_THREADS=$(nproc --ignore 1) # One less than the total number of threads
+
+    # Check available memory
+    total_mem=$(grep MemTotal < /proc/meminfo | awk '{print $2}')
+    total_mem_gb=$((total_mem / 1024 / 1024))
+
+    # Reduce number of threads for systems with less than 8 GB of memory
+    if ((total_mem < 8400000 )) ; then
+        NUM_THREADS=1
+        echo -e "${WARNING_COLOR}Detected less than or equal to 8 GB of memory. Using a single thread for compiling tools. This may take a while.${ENDC}"
+    fi
+
+    # Create installation directory
+    mkdir -p "$RISCV"/logs
+    mkdir -p "$RISCV"/versions
+
+    # Print more system information
+    echo "Installation path: $RISCV"
+    echo "Number of cores: $(nproc)"
+    echo "Total memory: $total_mem_gb GB"
+    echo "Using $NUM_THREADS thread(s) for compilation"
+fi
diff --git a/bin/wally-package-install.sh b/bin/wally-package-install.sh
index 7c7285b1c..25e7ac3cf 100755
--- a/bin/wally-package-install.sh
+++ b/bin/wally-package-install.sh
@@ -4,7 +4,7 @@
 ##
 ## Written: Jordan Carlin, jcarlin@hmc.edu
 ## Created: 30 June 2024
-## Modified:
+## Modified: May 30 2025
 ##
 ## Purpose: Package manager installation for open source tool chain installation script
 ##
@@ -29,26 +29,24 @@
 
 set -e # break on error
 
-# Colors
-BOLD='\033[1m'
-SECTION_COLOR='\033[95m'$BOLD
-SUCCESS_COLOR='\033[92m'
-FAIL_COLOR='\033[91m'
-ENDC='\033[0m' # Reset to default color
+STATUS="system_packages"
 
-# If run standalone, determine distro information. Otherwise, use info from main install script
+# If run standalone, check environment. Otherwise, use info from main install script
 if [ -z "$FAMILY" ]; then
     dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-    source "${dir}"/wally-distro-check.sh
+    WALLY="$(dirname "$dir")"
+    export WALLY
+    source "${dir}"/wally-environment-check.sh "--packages-only"
 fi
 
 
-# Packages are grouped by which tool requires them. If multiple tools need a package, it is included in the first tool only
+# Packages are grouped by which tool requires them. If multiple tools need a package, it is included in each tool's list.
 # Packages that are constant across distros
-GENERAL_PACKAGES+=(rsync git make cmake curl wget tar unzip bzip2 dialog mutt)
-GNU_PACKAGES+=(autoconf automake gawk bison flex texinfo gperf libtool patchutils bc gcc)
-VERILATOR_PACKAGES+=(help2man perl clang ccache numactl)
-BUILDROOT_PACKAGES+=(cpio)
+GENERAL_PACKAGES+=(rsync git curl wget tar unzip gzip bzip2 gcc make dialog mutt) # TODO: check what needs dialog
+GNU_PACKAGES+=(autoconf automake gawk bison flex texinfo gperf libtool patchutils bc)
+SAIL_PACKAGES+=(cmake)
+VERILATOR_PACKAGES+=(autoconf flex bison help2man perl ccache numactl)
+BUILDROOT_PACKAGES+=(patchutils perl cpio bc)
 
 # Distro specific packages and package manager
 case "$FAMILY" in
@@ -57,17 +55,18 @@ case "$FAMILY" in
         PACKAGE_MANAGER="dnf -y"
         UPDATE_COMMAND="$PACKAGE_MANAGER update"
         GENERAL_PACKAGES+=(which "$PYTHON_VERSION" "$PYTHON_VERSION"-pip pkgconf-pkg-config gcc-c++ ssmtp)
-        GNU_PACKAGES+=(libmpc-devel mpfr-devel gmp-devel zlib-devel expat-devel libslirp-devel ninja-build)
-        QEMU_PACKAGES+=(glib2-devel libfdt-devel pixman-devel)
-        SPIKE_PACKAGES+=(dtc boost-regex boost-system)
-        VERILATOR_PACKAGES+=(gperftools mold)
+        GNU_PACKAGES+=(libmpc-devel mpfr-devel gmp-devel zlib-devel expat-devel glib2-devel libslirp-devel)
+        QEMU_PACKAGES+=(glib2-devel libfdt-devel pixman-devel zlib-devel ninja-build)
+        SPIKE_PACKAGES+=(dtc) # compiling Spike with boost fails on RHEL
+        SAIL_PACKAGES+=(ninja-build gmp-devel)
+        VERILATOR_PACKAGES+=(zlib-devel gperftools-devel mold)
         BUILDROOT_PACKAGES+=(ncurses ncurses-base ncurses-libs ncurses-devel gcc-gfortran) # gcc-gfortran is only needed for compiling spec benchmarks on buildroot linux
         # Extra packages not available in rhel8, nice for Verilator
         if (( RHEL_VERSION >= 9 )); then
             VERILATOR_PACKAGES+=(perl-doc)
         fi
         # A newer version of gcc is required for qemu
-        OTHER_PACKAGES+=(gcc-toolset-13)
+        GENERAL_PACKAGES+=(gcc-toolset-13)
         ;;
     ubuntu | debian)
         if (( UBUNTU_VERSION >= 24 )); then
@@ -76,7 +75,7 @@ case "$FAMILY" in
             PYTHON_VERSION=python3.11
         elif (( UBUNTU_VERSION >= 20 )); then
             PYTHON_VERSION=python3.9
-            OTHER_PACKAGES+=(gcc-10 g++-10 cpp-10) # Newer version of gcc needed for Verilator
+            GENERAL_PACKAGES+=(gcc-10 g++-10 cpp-10) # Newer version of gcc needed for Verilator
         elif (( DEBIAN_VERSION >= 12 )); then
             PYTHON_VERSION=python3.11
         elif (( DEBIAN_VERSION >= 11 )); then
@@ -88,26 +87,28 @@ case "$FAMILY" in
         fi
         PACKAGE_MANAGER="DEBIAN_FRONTEND=noninteractive apt-get -y"
         UPDATE_COMMAND="$PACKAGE_MANAGER update && $PACKAGE_MANAGER upgrade --with-new-pkgs"
-        GENERAL_PACKAGES+=("$PYTHON_VERSION" python3-pip "$PYTHON_VERSION"-venv pkg-config g++ ssmtp)
-        GNU_PACKAGES+=(autotools-dev libmpc-dev libmpfr-dev libgmp-dev build-essential ninja-build zlib1g-dev libexpat1-dev libglib2.0-dev libslirp-dev)
-        QEMU_PACKAGES+=(libfdt-dev libpixman-1-dev)
+        GENERAL_PACKAGES+=("$PYTHON_VERSION" python3-pip "$PYTHON_VERSION"-venv pkg-config build-essential g++ ssmtp)
+        GNU_PACKAGES+=(autotools-dev libmpc-dev libmpfr-dev libgmp-dev zlib1g-dev libexpat1-dev libglib2.0-dev libslirp-dev)
+        QEMU_PACKAGES+=(libglib2.0-dev libfdt-dev libpixman-1-dev zlib1g-dev ninja-build)
         SPIKE_PACKAGES+=(device-tree-compiler libboost-regex-dev libboost-system-dev)
-        VERILATOR_PACKAGES+=(libunwind-dev libgoogle-perftools-dev perl-doc libfl2 libfl-dev zlib1g)
+        SAIL_PACKAGES+=(ninja-build libgmp-dev)
+        VERILATOR_PACKAGES+=(libfl2 libfl-dev zlib1g-dev libunwind-dev libgoogle-perftools-dev perl-doc)
         BUILDROOT_PACKAGES+=(ncurses-base ncurses-bin libncurses-dev gfortran) # gfortran is only needed for compiling spec benchmarks on buildroot linux
         VIVADO_PACKAGES+=(libncurses*) # Vivado hangs on the third stage of installation without this
         ;;
-    suse)
+    suse) 
         PYTHON_VERSION=python3.12
         PYTHON_VERSION_PACKAGE=python312
         PACKAGE_MANAGER="zypper -n"
         UPDATE_COMMAND="$PACKAGE_MANAGER update"
         GENERAL_PACKAGES+=("$PYTHON_VERSION_PACKAGE" "$PYTHON_VERSION_PACKAGE"-pip pkg-config)
-        GNU_PACKAGES+=(mpc-devel mpfr-devel gmp-devel zlib-devel libexpat-devel libslirp-devel ninja)
-        QEMU_PACKAGES+=(glib2-devel libpixman-1-0-devel) # maybe also need qemu itself?
+        GNU_PACKAGES+=(mpc-devel mpfr-devel gmp-devel zlib-devel libexpat-devel glib2-devel libslirp-devel)
+        QEMU_PACKAGES+=(glib2-devel libfdt-devel libpixman-1-0-devel zlib-devel ninja)
         SPIKE_PACKAGES+=(dtc libboost_regex1_75_0-devel libboost_system1_75_0-devel)
-        VERILATOR_PACKAGES+=(gperftools perl-doc)
+        SAIL_PACKAGES+=(ninja gmp-devel)
+        VERILATOR_PACKAGES+=(libfl2 libfl-devel zlib-devel gperftools-devel perl-doc)
         BUILDROOT_PACKAGES+=(ncurses-utils ncurses-devel ncurses5-devel gcc-fortran) # gcc-fortran is only needed for compiling spec benchmarks on buildroot linux
-        OTHER_PACKAGES+=(gcc13 gcc13-c++ cpp13) # Newer version of gcc needed for many tools. Default is gcc7
+        GENERAL_PACKAGES+=(gcc13 gcc13-c++ cpp13) # Newer version of gcc needed for many tools. Default is gcc7
         ;;
 esac
 
@@ -116,18 +117,18 @@ esac
 if [ "${1}" == "--check" ]; then
     section_header "Checking Dependencies from Package Manager"
     if [[ "$FAMILY" == rhel || "$FAMILY" == suse ]]; then
-        for pack in "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}" "${OTHER_PACKAGES[@]}"; do
+        for pack in "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${SAIL_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}"; do
             rpm -q "$pack" > /dev/null || (echo -e "${FAIL_COLOR}Missing packages detected (${WARNING_COLOR}$pack${FAIL_COLOR}). Run as root to auto-install or run wally-package-install.sh first.${ENDC}" && exit 1)
         done
     elif [[ "$FAMILY" == ubuntu || "$FAMILY" == debian ]]; then
-        for pack in "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}" "${OTHER_PACKAGES[@]}"; do
+        for pack in "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${SAIL_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}"; do
             dpkg -l "$pack" | grep "ii" > /dev/null || (echo -e "${FAIL_COLOR}Missing packages detected (${WARNING_COLOR}$pack${FAIL_COLOR}). Run as root to auto-install or run wally-package-install.sh first." && exit 1)
         done
     fi
     echo -e "${OK_COLOR}All required packages detected.${ENDC}"
 else
     # Check if root, otherwise exit with error message
-    [ "${EUID:=$(id -u)}" -ne 0 ] && echo -e "\n${FAIL_COLOR}Must be run as root${ENDC}" && exit 1
+    [ "$ROOT" == false ] && echo -e "\n${FAIL_COLOR}Must be run as root${ENDC}" && exit 1
 
     section_header "Installing/Updating Dependencies from Package Manager"
     # Enable extra repos necessary for rhel
@@ -150,7 +151,7 @@ else
     # Update and Upgrade tools
     eval "$UPDATE_COMMAND"
     # Install packages listed above using appropriate package manager
-    eval $PACKAGE_MANAGER install "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}" "${OTHER_PACKAGES[@]}" "${VIVADO_PACKAGES[@]}"
+    eval $PACKAGE_MANAGER install "${GENERAL_PACKAGES[@]}" "${GNU_PACKAGES[@]}" "${QEMU_PACKAGES[@]}" "${SPIKE_PACKAGES[@]}" "${SAIL_PACKAGES[@]}" "${VERILATOR_PACKAGES[@]}" "${BUILDROOT_PACKAGES[@]}" "${VIVADO_PACKAGES[@]}"
 
     # Post install steps
     # Vivado looks for ncurses5 libraries, but Ubuntu 24.04 only has ncurses6
diff --git a/bin/wally-tool-chain-install.sh b/bin/wally-tool-chain-install.sh
index 4b7c47d36..fee173f92 100755
--- a/bin/wally-tool-chain-install.sh
+++ b/bin/wally-tool-chain-install.sh
@@ -3,11 +3,8 @@
 ## Tool chain install script.
 ##
 ## Written: Rose Thompson rose@rosethompson.net
-## Created: 18 January 2023
-## Modified: 22 January 2023
-## Modified: 23 March 2023
 ## Modified: 30 June 2024, Jordan Carlin jcarlin@hmc.edu
-## Modified: 1 September 2024
+## Modified: 30 May 2025
 ##
 ## Purpose: Open source tool chain installation script
 ##
@@ -30,99 +27,9 @@
 ## and limitations under the License.
 ################################################################################################
 
-# Increasing NUM_THREADS will speed up parallel compilation of the tools
-NUM_THREADS=$(nproc --ignore 1) # One less than the total number of threads
-
-# Colors
-BOLD='\033[1m'
-UNDERLINE='\033[4m'
-SECTION_COLOR='\033[95m'$BOLD
-OK_COLOR='\033[94m'
-SUCCESS_COLOR='\033[92m'
-WARNING_COLOR='\033[93m'
-FAIL_COLOR='\033[91m'
-ENDC='\033[0m' # Reset to default color
-
-## Helper functions
-# Error handler
-error() {
-    echo -e "${FAIL_COLOR}Error: $STATUS installation failed"
-    echo -e "Error on line ${BASH_LINENO[0]} with command $BASH_COMMAND${ENDC}"
-    if [ -e "$RISCV/logs/$STATUS.log" ]; then
-        echo -e "Please check the log in $RISCV/logs/$STATUS.log for more information."
-    fi
-    exit 1
-}
-
-# Check if a git repository exists, is up to date, and has been installed
-# clones the repository if it doesn't exist
-# $1: repo name
-# $2: repo url to clone from
-# $3: file to check if already installed
-# $4: upstream branch, optional, default is master
-git_check() {
-    local repo=$1
-    local url=$2
-    local check=$3
-    local branch="${4:-master}"
-
-    # Clone repo if it doesn't exist
-    if [[ ! -e $repo ]]; then
-        for ((i=1; i<=5; i++)); do
-            git clone "$url" && break
-            echo -e "${WARNING_COLOR}Failed to clone $repo. Retrying.${ENDC}"
-            rm -rf "$repo"
-            sleep $i
-        done
-        if [[ ! -e $repo ]]; then
-            echo -e "${ERROR_COLOR}Failed to clone $repo after 5 attempts. Exiting.${ENDC}"
-            exit 1
-        fi
-    fi
-
-    # Get the current HEAD commit hash and the remote branch commit hash
-    cd "$repo"
-    git fetch
-    local local_head=$(git rev-parse HEAD)
-    local remote_head=$(git rev-parse origin/"$branch")
-
-    # Check if the git repository is not up to date or the specified file does not exist
-    if [[ "$local_head" != "$remote_head" ]]; then
-        echo "$repo is not up to date. Updating now."
-        true
-    elif [[ ! -e $check ]]; then
-        true
-    else
-        false
-    fi
-}
-
-# Log output to a file and only print lines with keywords
-logger() {
-    local log_file="$RISCV/logs/$STATUS.log"
-    local keyword_pattern="(\bwarning|\berror|\bfail|\bsuccess|\bstamp|\bdoesn't work)"
-    local exclude_pattern="(_warning|warning_|_error|error_|-warning|warning-|-error|error-|Werror|error\.o|warning flags)"
-
-    cat < /dev/stdin | tee -a "$log_file" | \
-    (grep -iE --color=never "$keyword_pattern" || true) | \
-    (grep -viE --color=never "$exclude_pattern" || true)
-}
+# NOTE: All scripts are sourced instead of executed so that environment variables and functions are shared properly.
 
 set -e # break on error
-trap error ERR # run error handler on error
-STATUS="setup" # keep track of what part of the installation is running for error messages
-
-# Check for clean flag
-if [ "$1" == "--clean" ] || [ "$2" == "--clean" ]; then
-    clean=true
-    shift
-fi
-
-# Check for no-buildroot flag
-if [ "$1" == "--no-buildroot" ] || [ "$2" == "--no-buildroot" ]; then
-    no_buidroot=true
-    shift
-fi
 
 # Determine script directory to locate related scripts
 dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
@@ -130,382 +37,86 @@ WALLY=$(dirname "$dir")
 export WALLY
 
 # Get Linux distro and version
-source "${dir}"/wally-distro-check.sh
-
-# Check if root
-ROOT=$( [ "${EUID:=$(id -u)}" == 0 ] && echo true || echo false);
-
-# Set installation directory based on execution privileges
-# If the script is run as root, the default installation path is /opt/riscv
-# If the script is run as a user, the default installation path is ~/riscv
-# The installation path can be overridden with an argument passed to the script.
-if [ "$ROOT" == true ]; then
-    export RISCV="${1:-/opt/riscv}"
-else
-    export RISCV="${1:-$HOME/riscv}"
-fi
-
-# Set environment variables
-export PATH=$PATH:$RISCV/bin:/usr/bin
-export PKG_CONFIG_PATH=$RISCV/lib64/pkgconfig:$RISCV/lib/pkgconfig:$RISCV/share/pkgconfig:$RISCV/lib/x86_64-linux-gnu/pkgconfig:$PKG_CONFIG_PATH
-
-# wget retry on host error flag not available with older wget on RHEL 8
-if (( RHEL_VERSION != 8 )); then
-    retry_on_host_error="--retry-on-host-error"
-fi
-
-# Check for incompatible PATH environment variable before proceeding with installation
-if [[ ":$PATH:" == *::* || ":$PATH:" == *:.:* ]]; then
-    echo -e "${FAIL_COLOR}Error: You seem to have the current working directory in your \$PATH environment variable."
-    echo -e "This won't work. Please update your \$PATH and try again.${ENDC}"
-    exit 1
-fi
-
-# Check available memory
-total_mem=$(grep MemTotal < /proc/meminfo | awk '{print $2}')
-total_mem_gb=$((total_mem / 1024 / 1024))
-
-# Print system information
-echo "Running as root: $ROOT"
-echo "Installation path: $RISCV"
-echo "Number of cores: $(nproc)"
-echo "Total memory: $total_mem_gb GB"
-
-# Reduce number of threads for systems with less than 8 GB of memory
-if ((total_mem < 8400000 )) ; then
-    NUM_THREADS=1
-    echo -e "${WARNING_COLOR}Detected less than or equal to 8 GB of memory. Using a single thread for compiling tools. This may take a while.${ENDC}"
-fi
-
-# Print number of threads
-echo "Using $NUM_THREADS thread(s) for compilation"
-
-# Create installation directory
-mkdir -p "$RISCV"/logs
+source "${dir}"/wally-environment-check.sh
 
 # Install/update system packages if root. Otherwise, check that packages are already installed.
-STATUS="system_packages"
 if [ "$ROOT" == true ]; then
     source "${dir}"/wally-package-install.sh
 else
     source "${dir}"/wally-package-install.sh --check
 fi
 
-# Older version of git defaults to protocol version incompatible with riscv-gnu-toolchain
-if (( UBUNTU_VERSION == 20 )); then
-    git config --global protocol.version 2
-fi
-
-# Enable newer version of gcc for older distros (required for QEMU/Verilator)
-if [ "$FAMILY" == rhel ]; then
-    source /opt/rh/gcc-toolset-13/enable
-elif [ "$FAMILY" == suse ]; then
-    mkdir -p "$RISCV"/gcc-13/bin
-    for f in gcc cpp g++ gcc-ar gcc-nm gcc-ranlib gcov gcov-dump gcov-tool lto-dump; do
-        ln -vsf /usr/bin/$f-13 "$RISCV"/gcc-13/bin/$f
-    done
-    export PATH="$RISCV"/gcc-13/bin:$PATH
-elif (( UBUNTU_VERSION == 20 )); then
-    mkdir -p "$RISCV"/gcc-10/bin
-    for f in gcc cpp g++ gcc-ar gcc-nm gcc-ranlib gcov gcov-dump gcov-tool lto-dump; do
-        ln -vsf /usr/bin/$f-10 "$RISCV"/gcc-10/bin/$f
-    done
-    export PATH="$RISCV"/gcc-10/bin:$PATH
-fi
-
 
 # Create python virtual environment so the python command targets desired version of python
-# and installed packages are isolated from the rest of the system.
-section_header "Setting up Python Environment"
-STATUS="python_virtual_environment"
-cd "$RISCV"
-if [ ! -e "$RISCV"/riscv-python/bin/activate ]; then
-    "$PYTHON_VERSION" -m venv riscv-python --prompt cvw
-    echo -e "${OK_COLOR}Python virtual environment created!\nInstalling pip packages.${ENDC}"
-else
-    echo -e "${OK_COLOR}Python virtual environment already exists.\nUpdating pip packages.${ENDC}"
-fi
-
-source "$RISCV"/riscv-python/bin/activate # activate python virtual environment
-
-# Install python packages, including RISCOF (https://github.com/riscv-software-src/riscof.git)
+# and installed packages are isolated from the rest of the system. Also installs python packages,
+# including RISCOF (https://github.com/riscv-software-src/riscof.git)
 # RISCOF is a RISC-V compliance test framework that is used to run the RISC-V Arch Tests.
-STATUS="python packages"
-pip install --upgrade pip && pip install --upgrade -r "$dir"/requirements.txt
+source "$WALLY"/bin/installation/python-setup.sh
 
-source "$RISCV"/riscv-python/bin/activate # reload python virtual environment
-echo -e "${SUCCESS_COLOR}Python environment successfully configured!${ENDC}"
 
-# Extra dependencies needed for older distros that don't have new enough versions available from package manager
+# Activate tools (python virtual environment and possibly newer version of gcc)
+source "${WALLY}"/bin/installation/activate-tools.sh
+
+
+# Newer version of glib required for QEMU.
+# Anything newer than this won't build on red hat 8
+# Used for all installed tools becuase mixing glib versions can cause issues.
 if (( RHEL_VERSION == 8 )) || (( UBUNTU_VERSION == 20 )); then
-    # Newer version of glib required for QEMU.
-    # Anything newer than this won't build on red hat 8
-    STATUS="glib"
-    if [ ! -e "$RISCV"/include/glib-2.0 ]; then
-        section_header "Installing glib"
-        pip install -U meson # Meson is needed to build glib
-        cd "$RISCV"
-        wget -nv --retry-connrefused $retry_on_host_error https://download.gnome.org/sources/glib/2.70/glib-2.70.5.tar.xz
-        tar -xJf glib-2.70.5.tar.xz
-        rm -f glib-2.70.5.tar.xz
-        cd glib-2.70.5
-        meson setup _build --prefix="$RISCV"
-        meson compile -C _build -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-        meson install -C _build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-        cd "$RISCV"
-        rm -rf glib-2.70.5
-        echo -e "${SUCCESS_COLOR}glib successfully installed!${ENDC}"
-    fi
+    source "$WALLY"/bin/installation/glib-installation.sh
 fi
 
-# Newer version of gmp needed for sail-riscv model
-if (( RHEL_VERSION == 8 )); then
-    STATUS="gmp"
-    if [ ! -e "$RISCV"/include/gmp.h ]; then
-        section_header "Installing gmp"
-        cd "$RISCV"
-        wget -nv --retry-connrefused $retry_on_host_error https://ftp.gnu.org/gnu/gmp/gmp-6.3.0.tar.xz
-        tar -xJf gmp-6.3.0.tar.xz
-        rm -f gmp-6.3.0.tar.xz
-        cd gmp-6.3.0
-        ./configure --prefix="$RISCV"
-        make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-        make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-        cd "$RISCV"
-        rm -rf gmp-6.3.0
-        echo -e "${SUCCESS_COLOR}gmp successfully installed!${ENDC}"
-    fi
-fi
-
-# Mold needed for Verilator
-if (( UBUNTU_VERSION == 20  || DEBIAN_VERSION == 11 )) || [ "$FAMILY" == suse ]; then
-    STATUS="mold"
-    if [ ! -e "$RISCV"/bin/mold ]; then
-        section_header "Installing mold"
-        cd "$RISCV"
-        wget -nv --retry-connrefused $retry_on_host_error --output-document=mold.tar.gz https://github.com/rui314/mold/releases/download/v2.34.1/mold-2.34.1-x86_64-linux.tar.gz
-        tar xz --directory="$RISCV" --strip-components=1 -f mold.tar.gz
-        rm -f mold.tar.gz
-        echo -e "${SUCCESS_COLOR}Mold successfully installed/updated!${ENDC}"
-    else
-        echo -e "${SUCCESS_COLOR}Mold already installed.${ENDC}"
-    fi
-fi
-
-# Newer version of CMake needed to build sail-riscv model (at least 3.20)
-if (( UBUNTU_VERSION == 20  || DEBIAN_VERSION == 11 )); then
-    STATUS="cmake"
-    if [ ! -e "$RISCV"/bin/cmake ]; then
-        section_header "Installing cmake"
-        cd "$RISCV"
-        wget -nv --retry-connrefused $retry_on_host_error --output-document=cmake.tar.gz https://github.com/Kitware/CMake/releases/download/v3.31.5/cmake-3.31.5-linux-x86_64.tar.gz
-        tar xz --directory="$RISCV" --strip-components=1 -f cmake.tar.gz
-        rm -f cmake.tar.gz
-        echo -e "${SUCCESS_COLOR}CMake successfully installed/updated!${ENDC}"
-    else
-        echo -e "${SUCCESS_COLOR}CMake already installed.${ENDC}"
-    fi
-fi
 
 # RISC-V GNU Toolchain (https://github.com/riscv-collab/riscv-gnu-toolchain)
 # The RISC-V GNU Toolchain includes the GNU Compiler Collection (gcc), GNU Binutils, Newlib,
 # and the GNU Debugger Project (gdb). It is a collection of tools used to compile RISC-V programs.
 # To install GCC from source can take hours to compile.
-# This configuration enables multilib to target many flavors of RISC-V.
-# This book is tested with GCC 13.2.0 and 14.2.0.
-section_header "Installing/Updating RISC-V GNU Toolchain"
-STATUS="riscv-gnu-toolchain"
-cd "$RISCV"
-if git_check "riscv-gnu-toolchain" "https://github.com/riscv/riscv-gnu-toolchain" "$RISCV/riscv-gnu-toolchain/stamps/build-gcc-newlib-stage2"; then
-    cd "$RISCV"/riscv-gnu-toolchain
-    git reset --hard && git clean -f && git checkout master && git pull && git submodule update
-    ./configure --prefix="${RISCV}" --with-multilib-generator="rv32e-ilp32e--;rv32i-ilp32--;rv32im-ilp32--;rv32iac-ilp32--;rv32imac-ilp32--;rv32imafc-ilp32f--;rv32imafdc-ilp32d--;rv64i-lp64--;rv64ic-lp64--;rv64iac-lp64--;rv64imac-lp64--;rv64imafdc-lp64d--;rv64im-lp64--;"
-    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf riscv-gnu-toolchain
-    fi
-    echo -e "${SUCCESS_COLOR}RISC-V GNU Toolchain successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}RISC-V GNU Toolchain already up to date.${ENDC}"
-fi
+source "$WALLY"/bin/installation/riscv-gnu-toolchain-install.sh
 
 
 # elf2hex (https://github.com/sifive/elf2hex)
 # The elf2hex utility to converts executable files into hexadecimal files for Verilog simulation.
 # Note: The exe2hex utility that comes with Spike doesn’t work for our purposes because it doesn’t
-# handle programs that start at 0x80000000. The SiFive version above is touchy to install.
-# For example, if Python version 2.x is in your path, it won’t install correctly.
-# Also, be sure riscv64-unknown-elf-objcopy shows up in your path in $RISCV/riscv-gnu-toolchain/bin
-# at the time of compilation, or elf2hex won’t work properly.
-section_header "Installing/Updating elf2hex"
-STATUS="elf2hex"
-cd "$RISCV"
-export PATH=$RISCV/bin:$PATH
-if git_check "elf2hex" "https://github.com/sifive/elf2hex.git" "$RISCV/bin/riscv64-unknown-elf-elf2bin"; then
-    cd "$RISCV"/elf2hex
-    git reset --hard && git clean -f && git checkout master && git pull
-    autoreconf -i
-    ./configure --target=riscv64-unknown-elf --prefix="$RISCV"
-    make 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf elf2hex
-    fi
-    echo -e "${SUCCESS_COLOR}elf2hex successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}elf2hex already up to date.${ENDC}"
-fi
+# handle programs that start at 0x80000000.
+source "$WALLY"/bin/installation/elf2hex-install.sh
 
 
 # QEMU (https://www.qemu.org/docs/master/system/target-riscv.html)
 # QEMU is an open source machine emulator and virtualizer capable of emulating RISC-V
-section_header "Installing/Updating QEMU"
-STATUS="qemu"
-cd "$RISCV"
-if git_check "qemu" "https://github.com/qemu/qemu" "$RISCV/include/qemu-plugin.h"; then
-    cd "$RISCV"/qemu
-    git reset --hard && git clean -f && git checkout master && git pull
-    ./configure --target-list=riscv64-softmmu --prefix="$RISCV"
-    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf qemu
-    fi
-    echo -e "${SUCCESS_COLOR}QEMU successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}QEMU already up to date.${ENDC}"
-fi
+source "$WALLY"/bin/installation/qemu-install.sh
 
 
 # Spike (https://github.com/riscv-software-src/riscv-isa-sim)
 # Spike is a reference model for RISC-V. It is a functional simulator that can be used to run RISC-V programs.
-section_header "Installing/Updating SPIKE"
-STATUS="spike"
-cd "$RISCV"
-if git_check "riscv-isa-sim" "https://github.com/riscv-software-src/riscv-isa-sim" "$RISCV/lib/pkgconfig/riscv-riscv.pc"; then
-    cd "$RISCV"/riscv-isa-sim
-    git reset --hard && git clean -f && git checkout master && git pull
-    mkdir -p build
-    cd build
-    ../configure --prefix="$RISCV"
-    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf riscv-isa-sim
-    fi
-    echo -e "${SUCCESS_COLOR}Spike successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}Spike already up to date.${ENDC}"
-fi
+source "$WALLY"/bin/installation/spike-install.sh
+
+
+# RISC-V Sail Model (https://github.com/riscv/sail-riscv)
+# The RISC-V Sail Model is the golden reference model for RISC-V. It is written in Sail.
+# Sail is a formal specification language designed for describing the semantics of an ISA.
+# It is used to generate the RISC-V Sail Model, which is the golden reference model for RISC-V.
+# The Sail Compiler is written in OCaml, which is an object-oriented extension of ML, which in turn
+# is a functional programming language suited to formal verification.
+source "$WALLY"/bin/installation/sail-install.sh
 
 
 # Verilator (https://github.com/verilator/verilator)
 # Verilator is a fast open-source Verilog simulator that compiles synthesizable Verilog code into C++ code.
 # It is used for linting and simulation of Wally.
-# Verilator needs to be built from source to get the latest version (Wally needs 5.021 or later).
-section_header "Installing/Updating Verilator"
-STATUS="verilator"
-if [ "$UBUNTU_VERSION" == 20 ] || [ "$DEBIAN_VERSION" == 11 ]; then
-    # On Ubuntu 20 and Debian 11, the last version of Verilator that build successfully is 5.036.
-    export VERILATOR_VERSION="5.036"
-else
-    export VERILATOR_VERSION="master"
-fi
-cd "$RISCV"
-if git_check "verilator" "https://github.com/verilator/verilator" "$RISCV/share/pkgconfig/verilator.pc"; then
-    unset VERILATOR_ROOT
-    cd "$RISCV"/verilator
-    git reset --hard && git clean -f && git checkout "$VERILATOR_VERSION" && (git pull || true)
-    autoconf
-    ./configure --prefix="$RISCV"
-    make -j "${NUM_THREADS}" 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    make install 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf verilator
-    fi
-    echo -e "${SUCCESS_COLOR}Verilator successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}Verilator already up to date.${ENDC}"
-fi
-
-
-# Sail Compiler (https://github.com/rems-project/sail)
-# Sail is a formal specification language designed for describing the semantics of an ISA.
-# It is used to generate the RISC-V Sail Model, which is the golden reference model for RISC-V.
-# The Sail Compiler is written in OCaml, which is an object-oriented extension of ML, which in turn
-# is a functional programming language suited to formal verification.
-section_header "Installing/Updating Sail Compiler"
-STATUS="sail_compiler"
-cd "$RISCV"
-wget -nv --retry-connrefused $retry_on_host_error --output-document=sail.tar.gz https://github.com/rems-project/sail/releases/latest/download/sail.tar.gz
-tar xz --directory="$RISCV" --strip-components=1 -f sail.tar.gz
-rm -f sail.tar.gz
-echo -e "${SUCCESS_COLOR}Sail Compiler successfully installed/updated!${ENDC}"
-
-# RISC-V Sail Model (https://github.com/riscv/sail-riscv)
-# The RISC-V Sail Model is the golden reference model for RISC-V. It is written in Sail (described above)
-section_header "Installing/Updating RISC-V Sail Model"
-STATUS="riscv-sail-model"
-if git_check "sail-riscv" "https://github.com/riscv/sail-riscv.git" "$RISCV/bin/riscv_sim_rv32d"; then
-    cd "$RISCV"/sail-riscv
-    git reset --hard && git clean -f && git checkout master && git pull
-    cmake -S . -B build -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_INSTALL_PREFIX="$RISCV" -GNinja 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    cmake --build build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    cmake --install build 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-    if [ "$clean" ]; then
-        cd "$RISCV"
-        rm -rf sail-riscv
-    fi
-    echo -e "${SUCCESS_COLOR}RISC-V Sail Model successfully installed/updated!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}RISC-V Sail Model already up to date.${ENDC}"
-fi
+source "$WALLY"/bin/installation/verilator-install.sh
 
 
 # OSU Skywater 130 cell library (https://foss-eda-tools.googlesource.com/skywater-pdk/libs/sky130_osu_sc_t12)
 # The OSU Skywater 130 cell library is a standard cell library that is used to synthesize Wally.
-section_header "Installing/Updating OSU Skywater 130 cell library"
-STATUS="osu_skywater_130_cell_library"
-mkdir -p "$RISCV"/cad/lib
-cd "$RISCV"/cad/lib
-if git_check "sky130_osu_sc_t12" "https://foss-eda-tools.googlesource.com/skywater-pdk/libs/sky130_osu_sc_t12" "$RISCV/cad/lib/sky130_osu_sc_t12" "main"; then
-    cd "$RISCV"/sky130_osu_sc_t12
-    git reset --hard && git clean -f && git checkout main && git pull
-    echo -e "${SUCCESS_COLOR}OSU Skywater library successfully installed!${ENDC}"
-else
-    echo -e "${SUCCESS_COLOR}OSU Skywater library already up to date.${ENDC}"
-fi
+source "$WALLY"/bin/installation/skywater-lib-install.sh
 
 
 # Buildroot and Linux testvectors
 # Buildroot is used to boot a minimal version of Linux on Wally.
 # Testvectors are generated using QEMU.
-if [ ! "$no_buidroot" ]; then
-    section_header "Installing Buildroot and Creating Linux testvectors"
-    STATUS="buildroot"
-    if [ -z "$LD_LIBRARY_PATH" ]; then
-        export LD_LIBRARY_PATH=$RISCV/lib:$RISCV/lib64:$RISCV/riscv64-unknown-elf/lib:$RISCV/lib/x86_64-linux-gnu/
-    else
-        export LD_LIBRARY_PATH=$RISCV/lib:$RISCV/lib64:$LD_LIBRARY_PATH:$RISCV/riscv64-unknown-elf/lib:$RISCV/lib/x86_64-linux-gnu/
-    fi
-    cd "$dir"/../linux
-    if [ ! -e "$RISCV"/buildroot ]; then
-        FORCE_UNSAFE_CONFIGURE=1 make 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ] # FORCE_UNSAFE_CONFIGURE is needed to allow buildroot to compile when run as root
-        echo -e "${SUCCESS_COLOR}Buildroot successfully installed and Linux testvectors created!${ENDC}"
-    elif [ ! -e "$RISCV"/linux-testvectors ]; then
-        echo -e "${OK_COLOR}Buildroot already exists, but Linux testvectors are missing. Generating them now.${ENDC}"
-        make dumptvs 2>&1 | logger; [ "${PIPESTATUS[0]}" == 0 ]
-        echo -e "${SUCCESS_COLOR}Linux testvectors successfully generated!${ENDC}"
-    else
-        echo -e "${OK_COLOR}Buildroot and Linux testvectors already exist.${ENDC}"
-    fi
-else
+if [ "$no_buildroot" = true ]; then
     echo -e "${OK_COLOR}Skipping Buildroot and Linux testvectors.${ENDC}"
+else
+    source "$WALLY"/bin/installation/buildroot-install.sh
 fi
 
 
@@ -519,7 +130,7 @@ if [ ! -e "${RISCV}"/site-setup.sh ]; then
     wget -nv --retry-connrefused $retry_on_host_error https://raw.githubusercontent.com/openhwgroup/cvw/main/site-setup.sh
     wget -nv --retry-connrefused $retry_on_host_error https://raw.githubusercontent.com/openhwgroup/cvw/main/site-setup.csh
     echo -e "${SUCCESS_COLOR}Site setup script successfully downloaded!${ENDC}"
-    echo -e "${WARNING_COLOR}Make sure to edit the environment variables in $RISCV/site-setup.sh (or .csh) to point to your installation of EDA tools and licensce files.${ENDC}"
+    echo -e "${WARNING_COLOR}Make sure to edit the environment variables in $RISCV/site-setup.sh (or .csh) to point to your installation of EDA tools and license files.${ENDC}"
 else
     echo -e "${OK_COLOR}Site setup script already exists. Not checking for updates to avoid overwritng modifications."
     echo -e "You may need to manually update it if there were changes upstream.${ENDC}"
diff --git a/linux/Makefile b/linux/Makefile
index 58cb6c69b..5f6775bcd 100644
--- a/linux/Makefile
+++ b/linux/Makefile
@@ -100,8 +100,10 @@ $(DISASSEMBLY_DIR)/%.objdump: $(IMAGE_DIR)/% | $(DISASSEMBLY_DIR)
 	$(WALLY)/bin/extractFunctionRadix.sh $@
 
 # Disassemble binaries ending in .elf
+# Add -D flag back to disassemble all sections (instead of just code sections)
+# once objdump bug is fixed and the pinned version of the toolchain is updated.
 $(DISASSEMBLY_DIR)/%.objdump: $(IMAGE_DIR)/%.elf | $(DISASSEMBLY_DIR)
-	riscv64-unknown-elf-objdump -SD $< >> $@
+	riscv64-unknown-elf-objdump -S $< >> $@
 	$(WALLY)/bin/extractFunctionRadix.sh $@
 
 # Load wally buildroot configuration
diff --git a/site-setup.sh b/site-setup.sh
index 32c1913f7..aa6ae3422 100755
--- a/site-setup.sh
+++ b/site-setup.sh
@@ -39,12 +39,7 @@ export SYN_memory=/home/jstine/WallyMem/rv64gc/
 #export osumemory=/import/yukari1/pdk/TSMC/WallyMem/rv64gc/
 
 # GCC
-if [ -z "$LD_LIBRARY_PATH" ]; then
-    export LD_LIBRARY_PATH=$RISCV/riscv64-unknown-elf/lib
-else
-    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$RISCV/riscv64-unknown-elf/lib
-fi
-
+export LD_LIBRARY_PATH=${LD_LIBRARY_PATH:+${LD_LIBRARY_PATH}:}$RISCV/riscv64-unknown-elf/lib
 # RISC-V Tools
 export LD_LIBRARY_PATH=$RISCV/lib:$RISCV/lib64:$LD_LIBRARY_PATH:$RISCV/lib/x86_64-linux-gnu/
 export PATH=$PATH:$RISCV/bin
diff --git a/synthDC/extractArea.pl b/synthDC/extractArea.pl
index cd795d3ff..e69cabdd5 100755
--- a/synthDC/extractArea.pl
+++ b/synthDC/extractArea.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S perl -w
+#!/usr/bin/env perl
 
 ###########################################
 ## extractArea.pl